Test for differential expression for RNA-seq data

apaUsage | Testing differential alternative polyadenylation (apa) usage... |

conditions | Accessor functions for the 'conditions' information in a... |

counts | Accessor functions for the 'counts' information in a... |

dispEst | Function to access the dispersion estimation for each gene |

dispTable | Access the dispersion table information for a XBSeqDataSet... |

estimateRealCount | Preliminary step to estimate the true signal based on... |

estimateSCV | Estimate squared coefficient of variation for each gene |

ExampleData | Example Datasets used in the manual pages as well as in... |

fitInfo | Accessor function for the fitInfo objects in a XBSeqDataSet |

getSignalVars | Estimate variance of the signal based on variance summation... |

MAplot | Generate maplot after differential expression test |

plotSCVEsts | Plot estimated squared coefficient of variation |

XBplot | Examine the distribution of observed signal and background... |

XBSeq | Express function to carry out XBSeq analysis |

XBSeqDataSet-class | Class '"XBSeqDataSet"' |

XBSeq-package | Differential expression analysis of RNA sequencing data by... |

XBSeqTest | XBSeq test for differential expression |

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